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Table 1 Bacteria species detected in the probiotic mixture and their detection in shrimp reared in the probiotic-based system (using the mixture) and in the traditional system

From: Bacterial biota of shrimp intestine is significantly modified by the use of a probiotic mixture: a high throughput sequencing approach

Phylum Species detected in the probiotic mixture Proportion (%) Traditional system Probiotic-based system
Proteobacteria Acinetobacter baumannii 3.2
Methylomonas methanica 0.8 +
Pseudomonas stutzeri 1.6 +
Pseudoxanthomonas suwonensis 1.6 +/−
Firmicutes Bacillus subtilis 0.8 +/−
Geobacillus thermoleovorans 41.6 +
Macrococcus caseolyticus 1.6
Sphingobacterium ingobacterium sp. 3.2 −/+
Weeksella virosa 12.8
Bacteriodetes Pedobacter saltans 0.8
Deinococcus-Thermus Oceanithermus profundus 1.6 +
Tenericutes Mycoplasma synoviae 1.6 +
Proteobacteria Colwellia psychrerythraea 1.6 + +
Ketogulonicigenium vulgare 0.8 + +
Salmonella enterica 1.6 + +
Xanthomonas albilineans 1.6 + +
Firmicutes Bacillus cereus 4.2 + +
Bacillus thuringiensis 3.8 + +
Bacillus weihenstephanensis 0.8 + +/−
Streptococcus agalactiae 11.2 + +
Actinobacteria Tropheryma whipplei 0.8 + +
Nocardioides ardioides sp. 0.8 + +
Spirochaetes Borrelia relia sp. 1.6 + +/−
  1. Detected (+), Detected at the 30th or 60th day of culture only (±), Not detected (). The proportion of reads detected for each species is also included