- Original Article
Geographical variation in shell shape of the pod razor shell Ensis siliqua (Bivalvia: Pharidae)
Helgoland Marine Research volume 67, pages 49–58 (2013)
The present study assessed the existence of variation in the shell shape of the pod razor shell (Ensis siliqua) throughout its distributional range in the north-eastern Atlantic. Shells of E. siliqua caught at seven collecting sites (three in Portugal, three in Spain and one in Ireland) were studied by geometric morphometric methods, using both landmark- and contour-based methods. Both approaches (landmarks inside the valves and shell outline) discriminated the shells from Aveiro (centre of Portugal) and Strangford Lough (Ireland) from those caught in the nearby localities (remaining Portuguese and Spanish sites, maximum distance of 550 km by sea). Landmark analysis revealed that shells from Aveiro were more similar to shells from Ireland (~1,500 km far away). Contour analysis revealed that shells from Aveiro had a shape with a comparatively larger height-to-width ratio, whereas shells from Ireland showed a slightly more curved outline than in the remaining sites. Landmark- and contour-based methods provided coherent complementary information, confirming the usefulness of geometric morphometric analyses for discerning differences in shell shape among populations of E. siliqua. A brief review of previous applications of geometric morphometric methods to modern bivalve species is also provided.
The comparison of anatomical features of organisms has been a central element in biology for centuries (Adams et al. 2004). Shell morphology, which preserves the ontogenetic record of growth, is now the principal subject of a subfield of morphometrics (Madec et al. 2003), namely theoretical morphology, which since the initial mathematical modelling of Raup (1966) has led to convincing studies on the formal and historical determinants of shell forms, as well as functional interpretations of their observed distributions in theoretical morphospaces (e.g. Stone 1996, 1999; McGhee 1999; Samadi et al. 2000). Several models of theoretical morphology of molluscan shells have been successfully developed in previous studies (Savazzi et al. 1982; Savazzi 1989, 1990; McClain et al. 2004). In more traditional approaches, the shape of molluscan shells has also been characterised by using simpler measurements, such as the ratio of width to height (for a review see Goodfriend 1986), or by plotting these two measurements in order to create a “size/shape space” (Cain 1981; Cameron and Cook 1989). More recently, geometric morphometric (GM) methods allowed the partitioning of shape and size components, preserving the main geometric properties of the specimens and generating a visual representation and shape variables than can be statistically analysed. GM is often described as a “revolution” in the area of morphometrics (Adams et al. 2004) and has been successfully applied in most fields of science, since these techniques are useful for biology, ecology, evolution, ontogeny, taxonomy, among other studies.
Due to their hard un-deformable shells, bivalves are an excellent group to apply GM methods (Rufino et al. 2007). Historically, GM techniques have been developed within two main approaches: (1) the analysis of outline or contour, where the frontier/border of a specimen is analysed (Rohlf and Archie 1984) and (2) the analysis of landmarks, where the change in position of homologous points identified in the specimens is quantified. Recent studies use a mixture of these two techniques, called semi-landmarks. Both approaches provide different types of information and can be applied in distinct circumstances. The first GM studies with bivalves used mainly contour-based methods (Ferson et al. 1985; Innes and Bates 1999), whereas presently most works employ landmarks or a combination of both approaches, which have been considered to be more powerful (Rufino et al. 2007). These techniques have been successfully applied to distinguish similar species of bivalves (Rufino et al. 2007; Costa et al. 2010), between fossil and modern specimens (Aguirre et al. 2006; Gordillo et al. 2011) or between wild and aquaculture stocks (Valladares et al. 2010), to detect ontogenetic shape changes (Márquez et al. 2010a) and to analyse geographical variation in shape (Palmer et al. 2004; Sousa et al. 2007; Costa et al. 2008; Márquez et al. 2010b; Gordillo et al. 2011; Márquez and Van der Molen 2011). A compilation of previous works that applied GM methods to modern bivalves is summarised in Table 1.
The pod razor shell Ensis siliqua (Linnaeus, 1758) is distributed in the Mediterranean Sea and in the Atlantic Ocean, from Morocco to Norway (Tebble 1966), being commercially exploited in Portugal, Spain, Ireland and UK (Guerra and Lodeiros 2008). The most common methods used to harvest E. siliqua are hand-gathering (Fahy and Carroll 2007; Constantino et al. 2009), and mechanic or hydraulic dredging (Gaspar and Monteiro 1998; Robinson and Richardson 1998; Gaspar et al. 1999; Tuck et al. 2000; Fahy and Gaffney 2001; Hauton et al. 2003a, b). This infaunal species inhabits the low intertidal zone down to 40 m depth (Fahy and Gaffney 2001; Rufino et al. 2010), occurring in substrates of fine to medium sand. It lives burrowed into the sediment with the long axis of the shell orientated roughly vertical, extending the siphons out of the surface to feed on suspended particles (Gaspar and Monteiro 1998; Gaspar et al. 1999; Fahy and Gaffney 2001; Rufino et al. 2010). The pod razor shell has a large and powerful foot that enables vertical burrowing into sand up to 60 cm depth. The characteristic shape of the shell of E. siliqua, elongated, laterally compressed, narrowed and with almost semi-cylindrical valves, facilitates rapid burrowing.
Most previous studies with E. siliqua have focused on life cycle and growth (Henderson and Richardson 1994; Gaspar and Monteiro 1998; Fahy and Gaffney 2001; Darriba et al. 2005; da Costa et al. 2010), larval cycle and aquaculture potential (Darriba et al. 2005; da Costa et al. 2010), genetics (Fernández-Tajes et al. 2007; Varela et al. 2007; Freire et al. 2008; Arias et al. 2011) or on fishery-related aspects (Robinson and Richardson 1998; Gaspar et al. 1999; Tuck et al. 2000; Fahy and Gaffney 2001; Hauton et al. 2003a, b; Constantino et al. 2009). To the author’s best knowledge, the shell shape of E. siliqua has never been analysed by applying GM approaches. Therefore, the present study aimed to analyse and compare the shape of E. siliqua shells across its distributional range in the north-eastern Atlantic (Portugal, Spain and Ireland), using both landmark- and contour-based methods, in order to assess the suitability of these techniques for discerning populations of this species.
Materials and methods
Study area and sample collection
Individuals of E. siliqua with a shell length ranging from 12 to 15 cm were caught by scuba diving or by dredging at seven collecting sites: three sites in Portugal (Olhão—PO, Setúbal—PS and Aveiro—PA), three sites in Spain (Barra de Cangas—SB, Fisterra—SF and Celeiro—SC) and one site in Ireland (Strangford Lough—IS) (Fig. 1). The southernmost and northernmost collecting sites are separated by approximately 17 degrees of latitude (Olhão ≈37°N and Strangford Lough ≈54°N), corresponding to a distance of almost 2,000 km (more than 1,000 nmi). In the laboratory, the soft parts were removed and the valves were cleaned, air-dried and stored for subsequent analyses.
In order to decrease unpredictable sources of variability, only the right valve of each shell was used for GM purposes. A preliminary analysis of E. siliqua shells revealed that the muscle scars on the inner surface of the valves were very difficult to identify, and thus to increase precision, shells were examined under a binocular microscope and the selected landmarks were carefully marked with a pen. Each valve was then digitised using a previously calibrated HP® Scanjet 5530 before subsequent GM analyses. The number of valves subjected to landmark and contour analyses differed due to the adequacy of each valve for the method employed. Indeed, valves with slightly damaged margins can be used for landmark analysis but not for contour analysis.
A total of 334 individuals were used for landmark analysis: 159 valves from Portugal (PO = 112, PS = 28 and PA = 19), 119 valves from Spain (SB = 49, SF = 60 and SC = 10) and 56 valves from Ireland (IS = 56). In each valve, 11 shell landmarks were selected to quantify shape: the first, second and third landmarks were located at the pallial sinus, the fourth and fifth in the limits of the scar of the posterior adductor muscle, the sixth and seventh corresponded to the posterior limits of the scar of the anterior adductor muscle, the eighth and ninth were located at the anterior limits of pallial line, whereas the tenth and eleventh (pseudo-landmarks) were located in the anterior margin of the valve (Fig. 2). Because most valves analysed were damaged in the posterior margin, no landmarks were selected in this area of the shell.
A more detailed description of GM methods using landmarks has been reported by Adams et al. (2004); therefore, only a brief explanation is provided here. After digitisation, landmark positions were rotated, scaled (to unit centroid size) and translated through Generalized Procrustes Analysis (GPA), a procedure that eliminates variation due to differences in scale, size and orientation. An average map (consensus configuration) of the shell shape, plus the uniform and non-uniform (partial warps) components of shape variation were calculated. The two uniform components describe differences that affect equally all parts of the shell (global differences). The non-uniform components (partial warps) describe localised departures from the average map of the shell. Partial warps together with uniform component are the statistical variables of shell shape. The effect of size (allometry) was tested through permutation bifactorial multivariate ANOVA applied to partial warps and uniform component, treating centroid size and geographical location (collecting site) as independent variables.
To check whether the shape variables were normally distributed, Shapiro–Wilk test for multivariate normality was performed (mvnormtest package; Jarek 2009), followed by permutational multivariate analysis of variance (adonis, vegan package; Oksanen et al. 2010), to determine whether there were significant differences depending on geographical location (collecting site) or whether there was a significant allometric effect (i.e. shape changes with size, quantified as centroid size). Relative warp analysis, a technique analogous to principal component analysis, was applied to determine the patterns of shape variation. The mean landmark configuration of the extremes of the two principal relative warps was estimated to determine which landmarks were varying. Coordinates of the landmarks were calculated from the digitised images of the shells using tpsDig (Rohlf 2003a). Partial warps and centroid size were calculated using tpsReg (Rohlf 2000), and relative warps were estimated using tpsRel (Rohlf 2003b). All other statistical analyses and graphical representations were performed using the free software R (R Development Core Team 2010).
A total of 224 individuals were examined for contour analysis: 128 valves from Portugal (PO = 86, PS = 27 and PA = 15), 66 valves from Spain (SB = 26, SF = 33 and SC = 7) and 30 valves from Ireland (IS = 30). The overall shell shape was studied through elliptic Fourier analysis of the contour coordinates (Rohlf and Archie 1984). For each shell, 100 coordinates of the outline were obtained using tpsDig (Rohlf 2003a). In a preliminary study based on visual inspection, it was concluded that 15 harmonics were sufficient to properly characterise the shell shape of E. siliqua, similar to the study by Márquez and Van der Molen (2011) with E. macha. As recommended by Rohlf and Archie (1984), 59 elliptic Fourier coefficients were normalised mathematically to be invariant of size, location, rotation and starting position (which was always approximately the left lower extreme of the shell). All further Fourier analyses were performed using the software Morpheus (Slice 1998). The mean outline of the shells of E. siliqua from each collecting site was reconstructed using Fourier analysis. The Shapiro–Wilk test for multivariate normality was applied to the harmonic coefficients to verify whether the data presented a Gaussian multivariate distribution (mvnormtest package; Jarek 2009), followed by permutational multivariate analysis of variance (adonis, vegan package; Oksanen et al. 2010).
After a detailed preliminary analysis, 11 landmarks were found essential to properly describe the main shape features of the shells of E. siliqua. Centroid size of the individuals differed between collecting sites (Fig. 3), with a north–south decreasing trend in mean shell length, which was largest in E. siliqua from Strangford Lough (IS) and smallest in Olhão (PO) (Kruskal–Wallis rank sum test: H = 179.727, P < 0.001). Still, there was some overlap in sizes across all collecting sites, which allowed both to compare the shape of the bivalves and to test for an eventual allometric effect.
The shape variables were not normally distributed (Shapiro–Wilks test for multivariate normality: W = 0.764, P < 0.001) and the variances differed significantly between collecting sites (Anderson’s multivariate homogeneity of group dispersions: ANOVA: F = 18.208, P < 0.001; Anderson 2006), with the shells from Olhão (PO) showing greater dispersions than the remaining samples. Therefore, nonparametric MANOVA was used to test for shape differences (Anderson 2001) between collecting sites, using centroid size as covariable. The nonparametric MANOVA indicated that both the covariable centroid size (r 2 = 0.011, F = 5.182, P = 0.003) and the collecting site (r 2 = 0.254, F = 18.832, P = 0.001) were significantly different, whereas their interaction was not statistically significant (r 2 = 0.015, F = 1.136, P = 0.286). In practice, this means that there is a significant change in shape with size (allometry), as well as significant differences in shape between collecting sites, but the change in shape with specimen size is similar for all studied populations.
Relative warp analysis showed clear trends in shape change, although with overlap of points in all collecting sites, typical in this kind of morphometric data (Fig. 4). The first three relative warps (RW1, RW2 and RW3) explained 50.4, 13.8 and 5.8 % of shape variability, respectively. The RW1 shows the main axis of shape change, distinguishing the shells from Aveiro (PA) and Strangford Lough (IS) from those of Olhão (PO), with the remaining populations being intermediate. The reconstruction of shape variation on this axis allowed detecting that the main changes occurred in the distance between landmark 3 and both landmarks 4–5 and 6–7, which was smaller in PA and IS than in shells from other collecting sites. In practice, this means that E. siliqua from PA and IS have the pallial sinus (landmark 3) closer to the scars of the posterior (landmarks 4 and 5) and anterior adductor muscles (landmarks 6 and 7) than E. siliqua from PO. Furthermore, these shells from Olhão (PO) presented two peaks of shape distribution over the RW1, which had no correspondence with centroid size, indicative of some morphological plasticity in this population. The RW2 detected some differences between the shells from Aveiro (PA, in the positive extreme) and the shells from Strangford Lough (IS, in the negative extreme), with the remaining populations being intermediate (Fig. 4). The shape reconstruction for the RW2 extremes revealed that shells in the positive side (where shells from PA are located) have greater distance between landmarks 4–5 and 6–7 than those in the negative side (where shells from IS are located). In practice, this means that E. siliqua from PA have a relatively longer body between the scars of the posterior (landmarks 4 and 5) and anterior adductor muscles (landmarks 6 and 7) than those from IS, with the remaining populations being intermediate between these two morphs.
The linear model of the RW1 with centroid size and collecting site showed that the main effects were both significant (ANCOVA: F centroid = 8.881, P = 0.003; F site = 11.265, P < 0.001), although without significant interaction between them (ANCOVA: F interaction = 0.796, P = 0.574). Altogether, this revealed that the relationship between the RW1 and centroid size was not significantly different among collecting sites, thus not relevant in terms of shape change across this axis. Furthermore, the plot of the residuals (data omitted for brevity) showed similar results and confirmed this same trend.
The harmonic coefficients were not normally distributed (Shapiro–Wilks test for multivariate normality: W = 0.193, P < 0.001) and the variances differed significantly between collecting sites (Anderson’s multivariate homogeneity of group dispersions: ANOVA F [6, 217] = 3.642, P = 0.001; Anderson 2006), with the shells of E. siliqua from Setúbal (PS) and Strangford Lough (IS) showing greater dispersions than the remaining samples. The nonparametric MANOVA confirmed the existence of significant differences in the contour of shells between collecting sites (r 2 = 0.227, F = 10.624, P < 0.001). The mean shell outline in each collecting site in relation to the global mean revealed that E. siliqua from Aveiro (PA) have thicker and shorter shells than in the remaining collecting sites, whereas shells from Strangford Lough (IS) are slightly more curved (Fig. 5).
Geometric morphometric methods applied in the study of E. siliqua shell morphology were able to discern three main shapes, corresponding to different geographical groups among seven collecting sites distributed along the north-eastern Atlantic coasts (Portugal, Spain and Ireland). As in previous studies, both landmark- and contour-based methods were used, because these provide different and complementary information, namely on the position of internal features of the shell (landmark analysis) that are related with physiological aspects (e.g. muscle scars), as well as on the shell outline (contour analysis). Still, both approaches provided coherent complementary results, separating the populations of E. siliqua of Aveiro (Portugal) and Strangford Lough (Ireland) from the remaining collecting sites. Indeed, the first relative warp showed that the shells from Aveiro (PA) were more similar to those from Strangford Lough (IS), which is located more than 1,500 km apart (around 840 nmi), than to the shells from the other Portuguese (PO and PS) and Spanish (SB, SF and SC) sites, which are situated within a maximum distance slightly over 400 km (almost 220 nmi). The shells from Olhão (PO) extended throughout the first relative warp, denoting a certain degree of morphological plasticity in this southernmost population of E. siliqua. On the whole, combining the results gathered using both methods (landmark and contour analyses), three main groups with different shell shape were identified: one morph from Strangford Lough (IS), another from Aveiro (PA) and another comprising the remaining populations of E. siliqua from the Iberian Peninsula (Portugal: PO and PS; Spain: SB, SF and SC).
The results from landmark analysis are corroborated by recent genetic studies with E. siliqua, where the larger differences were observed between Iberian and Irish populations, except for Aveiro individuals that were closer to northern individuals (Arias et al. 2011). These authors argued that the Aveiro population might be predominantly self-recruiting, as a consequence from some mechanism that could affect larval dispersal of E. siliqua. A recent geophysical model, where particles simulating larvae were released into the main Portuguese estuaries, estimated an along shore dispersal distance around 60 km for crab zoeae and greater than 100 km for crab megalopae (Peliz et al. 2007). Furthermore, these authors concluded that larvae released in the Ria de Aveiro can easily reach northern estuaries up to Minho River, and only if these estuaries are also sources of larvae, these could reach Fisterra, but not northern than this location. These findings support the similarities in shell shape among the Spanish populations of E. siliqua (SB, SF and SC), but do not explain the differences in shape between the shells from Aveiro (PA) and from the other collecting sites along the Portuguese (PO and PS) and Spanish (SB, SF and SC) coasts. Peliz et al. (2007) also found little transport southern of the Mondego River, which excludes larval transport by along shore currents as a factor responsible for the similarities observed between the shells of E. siliqua from Portuguese (PO and PS) and Spanish (SB, SF and SC) populations. Moreover, crab larvae have a longer pelagic larval duration than E. siliqua, which under laboratory conditions lasts for only 15–20 days before settlement (Darriba et al. 2005; da Costa et al. 2010). Probably for this reason, the pod razor shell is a typical inhabitant of sandy beaches, whose larvae find settlement spots in the vicinities of the source populations along the coasts of the Iberian Peninsula.
As mentioned above, there was a recent study focusing on the genetic identification of E. siliqua populations along the north-eastern Atlantic (Arias et al. 2011). However, the phenotype of an organism does not always directly reflect its genotype information, and often genetic evidence does not match with results from shape analysis (Lawing and Polly 2009). In addition, results from genetic studies greatly depend on the methods applied and on the markers used. For instance, Sousa et al. (2007) studying an invasive bivalve in two Portuguese estuaries were able to identify morphological differences through GM methods, where no genetic evidences were observed. Indeed, GM is an excellent tool to identify phenotypic differences related to environmental specificities in different locations and thus ideal to study geographical shape changes. Arias et al. (2011) considered that genetic similarities between populations of E. siliqua from Aveiro (Portugal) and Ireland are most likely due to anthropogenic influence, for instance through larval transport in ballast water of ships. However, although the existence of an important commercial harbour, a shipyard and a fishing port in the Ria de Aveiro, routes connecting Aveiro and Ireland are certainly sporadic.
Morphometrics is an evolving discipline, providing increasingly powerful techniques for quantitative characterisation and comparison of shape (Roth and Mercer 2000). Before the 1990s, morphometric tools were restricted to bivariate plots and multivariate statistics (Urdy et al. 2010a), but since then enhancements included the development of GM that more directly preserve geometry and the spatial relationships among landmark points and the contours of a form (Roth and Mercer 2000). Bivalves have hard shells, which make them excellent candidates for geographical studies of morphological variation in individuals from different populations, based solely on the analysis of their shape profiles (Costa et al. 2008). In the present study, the use of two complementary GM methods (landmark and contour analysis) was fundamental. Shape differences detected in E. siliqua caught at several collecting sites were not limited to the shell outline, but also occurred in the inner surface of the valves, that is reflecting differences in the internal structure of the bivalves. Variation in mollusc shell morphology can be both genetically and environmentally determined. However, although there is an extensive literature on correlations between some environmental aspects and mollusc shell shapes (Urdy et al. 2010b), the contribution of local adaptation to morphological differentiation of bivalve populations is still poorly studied (Costa et al. 2008). In this context, further research should focus on the phenotypic variation and morphological plasticity of the shell of E. siliqua as a function of different environmental conditions (e.g. hydrodynamics, depth, sediment type and grain size). Altogether, these environmental variables are known to influence bivalve’s burrowing ability and thus might also play a key role in the geographical variation in shell shape of E. siliqua.
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The authors would like to thank Dr. Dai Roberts and Adele Cromie for providing samples of pod razor shells from Ireland. This study was funded by Community Initiative Programmes (INTERREG-IIIB, Atlantic Area) Sustainable HARvesting of Ensis (090–SHARE) and Towards Integrated Management of Ensis Stocks (206–TIMES) from the European Community. Marta M. Rufino and Paulo Vasconcelos benefited from postdoctoral grants (SFRH/BPD/14935/2004 and SFRH/BPD/26348/2006, respectively) awarded by the Fundação para a Ciência e Tecnologia (FCT—Portugal). Finally, the authors acknowledge three anonymous referees for valuable comments and suggestions that greatly improved the revised manuscript.
Communicated by Heinz-Dieter Franke.
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Rufino, M.M., Vasconcelos, P., Pereira, F. et al. Geographical variation in shell shape of the pod razor shell Ensis siliqua (Bivalvia: Pharidae). Helgol Mar Res 67, 49–58 (2013). https://doi.org/10.1007/s10152-012-0303-6
- Pod razor shell
- Ensis siliqua
- Shell shape
- Geometric morphometrics